The SnpReady for Rice (SR4R) database presents four reference panels of SNPs and tools to satisfy different aspects of population genetics, evolutionary analysis, association studies and genomic breeding research for the rice (Oryza sativa) community.
Assign rice varieties to five groups based on 38 barcodeSNPs using machine learning models for a provided hapmap file.
To match and identify rice varieties based on 38 barcodeSNPs for a provided hapmap file. The output is ordered by different site numbers(DSN) in the format of “Accession Name (group, DSN)”.
Yan J, Zou D, Li C, Zhang Z, Song S, Wang X. SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice. Genomics Proteomics Bioinformatics.2020. [PMID: 32619768]